Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11855248 chr15:41276158 G/A 0.000121 497 31.53 31.93 32.1 KM Plot
THCA rs11888993 chr2:234341607 G/A 9.31E-7 502 31.67 31.43 26.45 KM Plot
THCA rs11962883 chr6:133118491 A/C 6.86E-8 498 31.47 32.1 30.78 KM Plot
THCA rs11964512 chr6:133088803 T/C 2.51E-13 500 31.53 32.85 30.53 KM Plot
THCA rs11971366 chr7:32779108 T/A 0.000101 498 31.47 31.7 31.97 KM Plot
THCA rs11975790 chr7:16470706 C/G 6.16E-6 503 31.37 32.77 32.1 KM Plot
THCA rs11976300 chr7:32793157 G/T 1.18E-5 498 31.47 31.4 31.83 KM Plot
THCA rs11976674 chr7:32809022 G/T 0.000102 500 31.45 31.47 32.1 KM Plot
THCA rs11977050 chr7:32793663 C/T 9.81E-5 502 31.47 31.47 31.97 KM Plot
THCA rs12122 chr12:49334762 C/G 1.74E-5 503 31.47 35.07 13.07 KM Plot
THCA rs12123275 chr1:41559065 A/G 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs12193474 chr6:133186168 T/C 6.12E-5 499 31.47 32.77 24.42 KM Plot
THCA rs12204027 chr6:133122831 A/G 1.15E-6 501 31.47 32.43 30.78 KM Plot
THCA rs12211701 chr6:133119757 C/G 8.1E-6 500 31.47 32.43 30.78 KM Plot
THCA rs12216637 chr7:44335155 A/T 1.32E-5 503 31.9 29.73 18.43 KM Plot